STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41268.1Protein containing cAMP-binding domain of CRP. (225 aa)    
Predicted Functional Partners:
GAP41086.1
Protein containing PAS domain S-box.
  
 0.939
ATC1_13163
Protein containing PAS domain S-box.
  
 0.939
ATC1_12168
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
    
 0.896
GAP41448.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
  
 0.810
rpoB
DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.807
ATC1_13971
Protein containing PAS domain S-box.
  
 0.799
ATC1_13979
Protein containing PAS domain S-box.
  
 0.799
ATC1_12199
Selenium-dependent xanthine dehydrogenase.
    
 0.782
ATC1_12368
CO/xanthine dehydrogenase, Mo-binding subunit.
    
 0.782
GAP41622.1
Aldehyde dehydrogenase, molybdenum-binding subunit apoprotein.
    
 0.782
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.