STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP41431.1Bacterial capsule synthesis protein PGA_cap. (509 aa)    
Predicted Functional Partners:
GAP41432.1
Radical SAM enzyme.
 
     0.812
GAP41433.1
Hypothetical protein.
       0.773
GAP41434.1
Alpha/beta hydrolase family.
       0.720
ATC1_11246
Vancomycin resistance protein YoaR.
  
     0.714
GAP41435.1
tspO and MBR related protein.
       0.660
ATC1_1337
Uncharacterized conserved protein YabE, contains G5 and tandem DUF348 domains.
  
     0.637
GAP41582.1
Beta-lactamase class A.
  
     0.617
GAP41838.1
Hypothetical protein.
  
     0.610
GAP41182.1
Protein containing LysM domain.
 
     0.601
GAP41428.1
L,D-transpeptidase catalytic domain.
 
     0.599
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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