STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATC1_13295Patatin-like phospholipase. (388 aa)    
Predicted Functional Partners:
GAP41419.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
      0.903
ATC1_13199
Type IV secretion-system coupling protein DNA-binding domain.
    
   0.568
ATC1_12369
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase.
  
 
 0.565
GAP41615.1
Lysophospholipase, alpha-beta hydrolase superfamily.
   
 
 0.551
ATC1_11397
Membrane-associated phospholipid phosphatase.
 
 0.548
ATC1_11154
CDP-diglyceride synthetase; Belongs to the CDS family.
  
  
  0.539
GAP41672.1
methionyl-tRNA formyltransferase.
    
 0.512
ATC1_1176
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
 0.504
ATC1_1357
Glycerophosphoryl diester phosphodiesterase.
    
  0.492
ATC1_12300
FAD/FMN-containing dehydrogenase.
    
  0.483
Your Current Organism:
Flexilinea flocculi
NCBI taxonomy Id: 1678840
Other names: Anaerolineae bacterium TC1, CGMCC 1.5202, F. flocculi, Flexilinea flocculi Sun et al. 2016, JCM 30897, strain TC1
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