STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP43235.1Cytochrome c biogenesis factor. (793 aa)    
Predicted Functional Partners:
GAP45198.1
CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH.
 
 
 0.902
GAP45200.1
Cytochrome C assembly protein.
 
  
 0.853
GAP45201.1
ABC-type transport system.
 
  
 0.838
GAP43117.1
ABC-type multidrug transport system, ATPase component.
 
   
 0.693
GAP43234.1
Predicted oxidoreductase.
       0.670
GAP43233.1
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
       0.657
GAP43232.1
4-hydroxybenzoate polyprenyltransferase.
       0.642
GAP42755.1
Hypothetical protein.
  
     0.577
GAP43862.1
Protein containing WD40-like beta propeller repeat.
  
     0.535
GAP43231.1
MAF protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.524
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.