STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAP44808.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
GAP44807.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.808
GAP44806.1
fecR family protein.
 
     0.667
GAP44500.1
Hypothetical protein.
  
     0.632
GAP43230.1
Opacity protein.
  
     0.553
GAP42392.1
Hypothetical protein.
  
     0.544
GAP45072.1
Peptidase MA superfamily.
  
     0.535
GAP44169.1
Hypothetical protein.
  
     0.518
GAP44809.1
Hypothetical protein.
       0.480
GAP44200.1
Hypothetical protein.
  
     0.475
GAP44201.1
Hypothetical protein.
  
     0.474
Your Current Organism:
Lentimicrobium saccharophilum
NCBI taxonomy Id: 1678841
Other names: Bacteroidales bacterium TBC1, DSM 100618, JCM 30898, L. saccharophilum, Lentimicrobium saccharophilum Sun et al. 2016, strain TBC1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.