STRINGSTRING
uspA protein (Bifidobacterium adolescentis) - STRING interaction network
"uspA" - annotation not available in Bifidobacterium adolescentis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspAannotation not available (335 aa)    
Predicted Functional Partners:
phoA
annotation not available (705 aa)
     
   
  0.759
BADO_1490
annotation not available (289 aa)
 
          0.744
BADO_0586
annotation not available (864 aa)
   
   
  0.628
BADO_0271
annotation not available (729 aa)
   
          0.600
BADO_1045
annotation not available (69 aa)
   
          0.543
BADO_1115
annotation not available (948 aa)
 
 
      0.514
BADO_0728
annotation not available (389 aa)
   
     
  0.505
BADO_0270
annotation not available (740 aa)
   
          0.496
BADO_0389
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine (380 aa)
   
     
  0.480
BADO_1090
annotation not available (700 aa)
   
          0.476
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 1680
Other names: AS 1.2190, ATCC 15703, B. adolescentis, BCRC 14606, Bifidobacterium adolescentis, CCRC 14606, CCUG 17359, CCUG 18363, CIP 64.59, DSM 20083, LMG 10502, NCAIM B.01822, NCTC 11814
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