STRINGSTRING
icd1 protein (Bifidobacterium adolescentis) - STRING interaction network
"icd1" - annotation not available in Bifidobacterium adolescentis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icd1annotation not available (406 aa)    
Predicted Functional Partners:
BADO_1102
Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis-aconitate (899 aa)
   
  0.966
gltB
annotation not available (1523 aa)
       
  0.913
gdhA
annotation not available (448 aa)
     
  0.874
ldh
annotation not available (320 aa)
   
 
  0.853
purB
annotation not available (484 aa)
   
 
  0.831
BADO_0884
annotation not available (510 aa)
   
 
  0.816
BADO_0204
annotation not available (396 aa)
   
 
  0.816
argH
annotation not available (495 aa)
   
 
  0.810
gltD
annotation not available (515 aa)
         
  0.803
sucC
Succinate--CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit (395 aa)
   
   
  0.720
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 1680
Other names: AS 1.2190, ATCC 15703, B. adolescentis, BCRC 14606, Bifidobacterium adolescentis, CCRC 14606, CCUG 17359, CCUG 18363, CIP 64.59, DSM 20083, LMG 10502, NCAIM B.01822, NCTC 11814
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