STRINGSTRING
garA protein (Bifidobacterium adolescentis) - STRING interaction network
"garA" - annotation not available in Bifidobacterium adolescentis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
garAannotation not available (148 aa)    
Predicted Functional Partners:
pknA
annotation not available (314 aa)
 
 
  0.786
BADO_0873
annotation not available (206 aa)
 
          0.741
odhI
annotation not available (171 aa)
   
     
  0.715
BADO_0032
annotation not available (537 aa)
 
 
  0.703
BADO_1412
annotation not available (286 aa)
 
 
  0.682
pknB_2
annotation not available (686 aa)
 
 
  0.636
BADO_0875
annotation not available (74 aa)
              0.627
pknA2
annotation not available (723 aa)
 
 
  0.622
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (246 aa)
   
          0.509
BADO_0876
annotation not available (58 aa)
              0.467
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 1680
Other names: AS 1.2190, ATCC 15703, B. adolescentis, BCRC 14606, Bifidobacterium adolescentis, CCRC 14606, CCUG 17359, CCUG 18363, CIP 64.59, DSM 20083, LMG 10502, NCAIM B.01822, NCTC 11814
Server load: low (10%) [HD]