STRINGSTRING
ybjJ protein (Bifidobacterium adolescentis) - STRING interaction network
"ybjJ" - annotation not available in Bifidobacterium adolescentis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybjJannotation not available (410 aa)    
Predicted Functional Partners:
BADO_1060
annotation not available (1625 aa)
              0.609
ptsG
annotation not available (697 aa)
         
  0.587
BADO_1648
annotation not available (306 aa)
   
   
  0.538
BADO_1421
annotation not available (460 aa)
   
   
  0.538
BADO_1062
annotation not available (774 aa)
              0.489
BADO_0326
annotation not available (909 aa)
   
   
  0.461
BADO_1681
annotation not available (408 aa)
 
     
  0.429
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (478 aa)
         
  0.410
Your Current Organism:
Bifidobacterium adolescentis
NCBI taxonomy Id: 1680
Other names: AS 1.2190, ATCC 15703, B. adolescentis, BCRC 14606, Bifidobacterium adolescentis, CCRC 14606, CCUG 17359, CCUG 18363, CIP 64.59, DSM 20083, LMG 10502, NCAIM B.01822, NCTC 11814
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