STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
flr_1Flavoredoxin. (194 aa)    
Predicted Functional Partners:
preA_1
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
  0.774
preA_2
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA.
  
 
 0.762
frp
NADPH-flavin oxidoreductase.
  
 
 0.693
CUP20277.1
Acyl-CoA dehydrogenase%2C short-chain specific.
  
 
 0.608
ssuC
Putative aliphatic sulfonates transport permease protein ssuC.
  
 
  0.590
codA_1
Cytosine deaminase.
    
  0.519
pyrK
Dihydrdoorotate oxidase B%2C electron transfer subunit.
  
 
  0.493
ribF_2
Riboflavin biosynthesis protein ribF.
    
  0.485
ribF_1
Riboflavin biosynthesis protein ribF; Belongs to the ribF family.
    
  0.481
CUP45099.1
Uncharacterised protein.
    
 0.443
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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