STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
odh_2Opine dehydrogenase. (356 aa)    
Predicted Functional Partners:
CUP55381.1
PAP2 superfamily.
 
 
 0.924
CUP56304.1
Farnesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.594
plsC
1-acyl-sn-glycerol-3-phosphate acyltransferase.
    
 0.553
CUP18797.1
Glycosyl transferase family 2.
    
 0.533
psrA_2
Sulfur reductase chain A.
    
  0.484
uppS
Undecaprenyl pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
    
 0.477
CUP83706.1
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase.
 
 
  0.451
gabD_1
Succinate-semialdehyde dehydrogenase [NADP(+)] GabD.
  
 
 0.450
gabD_2
Succinate-semialdehyde dehydrogenase [NADP(+)] GabD.
  
 
 0.450
morA
Morphine 6-dehydrogenase.
  
 
 0.443
Your Current Organism:
Anaerotruncus colihominis
NCBI taxonomy Id: 169435
Other names: A. colihominis, Anaerotruncus colihominis Lawson et al. 2004, CCUG 45055, CIP 107754, DSM 17241, JCM 15631, Ruminococcus sp. 14565, WAL 14565
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