STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prkC_2Serine/threonine-protein kinase PrkC. (389 aa)    
Predicted Functional Partners:
stp_2
Serine/threonine phosphatase stp.
 
 
 0.849
fhaB
FHA domain-containing protein FhaB.
 
 
 
 0.736
AQR98995.1
FHA domain protein.
   
 
 0.607
AQR98996.1
Hypothetical protein.
   
 
 0.601
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
    
 
 0.592
AQR99784.1
Hypothetical protein.
       0.548
stp_1
Serine/threonine phosphatase stp.
 
 
 0.514
fruA_3
PTS system fructose-specific EIIABC component.
  
   0.484
pknB
Serine/threonine-protein kinase PknB.
 
 
0.461
prkC_1
Serine/threonine-protein kinase PrkC.
 
 
0.459
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.