Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| apt | flaA | gene:17594181 | gene:17593341 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.457 |
| apt | lmo0674 | gene:17594181 | gene:17593325 | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | 0.553 |
| flaA | apt | gene:17593341 | gene:17594181 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.457 |
| flaA | lmo0674 | gene:17593341 | gene:17593325 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | 0.633 |
| flaA | lmo0675 | gene:17593341 | gene:17593326 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo0675 protein. | 0.461 |
| flaA | lmo0676 | gene:17593341 | gene:17593327 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo0676 protein; Similar to flagellar biosynthesic protein FliP. | 0.932 |
| flaA | lmo0677 | gene:17593341 | gene:17593328 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo0677 protein; Similar to flagellar biosynthesis protein FliQ. | 0.794 |
| flaA | lmo0678 | gene:17593341 | gene:17593329 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo0678 protein; Similar to flagellar biosynthetic protein FliR. | 0.888 |
| flaA | lmo0688 | gene:17593341 | gene:17593339 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Lmo0688 protein. | 0.627 |
| flaA | sigB | gene:17593341 | gene:17593546 | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | RNA polymerase sigma-37 factor (sigma-B); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.764 |
| lmo0673 | lmo0674 | gene:17593324 | gene:17593325 | Lmo0673 protein. | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | 0.840 |
| lmo0673 | lmo0675 | gene:17593324 | gene:17593326 | Lmo0673 protein. | Lmo0675 protein. | 0.490 |
| lmo0673 | lmo0676 | gene:17593324 | gene:17593327 | Lmo0673 protein. | Lmo0676 protein; Similar to flagellar biosynthesic protein FliP. | 0.453 |
| lmo0673 | lmo0677 | gene:17593324 | gene:17593328 | Lmo0673 protein. | Lmo0677 protein; Similar to flagellar biosynthesis protein FliQ. | 0.459 |
| lmo0673 | lmo0678 | gene:17593324 | gene:17593329 | Lmo0673 protein. | Lmo0678 protein; Similar to flagellar biosynthetic protein FliR. | 0.458 |
| lmo0673 | lmo0688 | gene:17593324 | gene:17593339 | Lmo0673 protein. | Lmo0688 protein. | 0.414 |
| lmo0674 | apt | gene:17593325 | gene:17594181 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.553 |
| lmo0674 | flaA | gene:17593325 | gene:17593341 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | Flagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.633 |
| lmo0674 | lmo0673 | gene:17593325 | gene:17593324 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | Lmo0673 protein. | 0.840 |
| lmo0674 | lmo0675 | gene:17593325 | gene:17593326 | Motility gene repressor MogR; Transcriptional repressor of flagellar motility genes, such as flaA, during extracellular growth at 37 degrees Celsius and during intracellular infection. Binds directly to the gene promoter region and probably prevents RNA polymerase binding. At low temperatures, MogR repression activity is modulated by the DegU response regulator in an unknown mechanism. Required for full virulence. | Lmo0675 protein. | 0.644 |
page 1 of 4