Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cspL | lmo0866 | gene:17594021 | gene:17593517 | Similar to cold shock protein. | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | 0.637 |
| cspL | lmo1722 | gene:17594021 | gene:17594404 | Similar to cold shock protein. | Lmo1722 protein; Similar to ATP-dependent RNA helicases. | 0.630 |
| cspL | lmo1826 | gene:17594021 | gene:17594511 | Similar to cold shock protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.704 |
| cspL | rpmA | gene:17594021 | gene:17594197 | Similar to cold shock protein. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.628 |
| cspL | rpmB | gene:17594021 | gene:17594501 | Similar to cold shock protein. | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.643 |
| cspL | rpoA | gene:17594021 | gene:17595324 | Similar to cold shock protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.677 |
| cspL | rpoB | gene:17594021 | gene:17592909 | Similar to cold shock protein. | RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.701 |
| cspL | rpsE | gene:17594021 | gene:17595333 | Similar to cold shock protein. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.637 |
| cspL | rpsL | gene:17594021 | gene:17595373 | Similar to cold shock protein. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.646 |
| cspL | rpsQ | gene:17594021 | gene:17595341 | Similar to cold shock protein. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.654 |
| lmo0866 | cspL | gene:17593517 | gene:17594021 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | Similar to cold shock protein. | 0.637 |
| lmo0866 | lmo1826 | gene:17593517 | gene:17594511 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.575 |
| lmo0866 | rpmA | gene:17593517 | gene:17594197 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | Ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.489 |
| lmo0866 | rpoA | gene:17593517 | gene:17595324 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.719 |
| lmo0866 | rpoB | gene:17593517 | gene:17592909 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.685 |
| lmo0866 | rpsE | gene:17593517 | gene:17595333 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family. | 0.874 |
| lmo0866 | rpsL | gene:17593517 | gene:17595373 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.578 |
| lmo0866 | rpsQ | gene:17593517 | gene:17595341 | ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity (By similarity). Involved in cold tolerance, motility and alcohol tolerance; Belongs to the DEAD box helicase family. CshA subfamily. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.541 |
| lmo1722 | cspL | gene:17594404 | gene:17594021 | Lmo1722 protein; Similar to ATP-dependent RNA helicases. | Similar to cold shock protein. | 0.630 |
| lmo1722 | lmo1826 | gene:17594404 | gene:17594511 | Lmo1722 protein; Similar to ATP-dependent RNA helicases. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.575 |
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