Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
aroA | lmo2749 | gene:17594257 | gene:17595466 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo2749 protein; Similar to glutamine amidotransferase. | 0.949 |
aroA | lmo2750 | gene:17594257 | gene:17595467 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Lmo2750 protein; Similar to para-aminobenzoate synthase component I. | 0.959 |
aroA | trpA | gene:17594257 | gene:17594284 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.571 |
aroA | trpB | gene:17594257 | gene:17594285 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.487 |
aroA | trpC | gene:17594257 | gene:17594287 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Highly similar to indol-3-glycerol phosphate synthases; Belongs to the TrpC family. | 0.767 |
aroA | trpD | gene:17594257 | gene:17594288 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.913 |
aroA | trpE | gene:17594257 | gene:17594290 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.951 |
aroA | trpF | gene:17594257 | gene:17594286 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | Phosphoribosyl anthranilate isomerase; Belongs to the TrpF family. | 0.745 |
aroA | trpG | gene:17594257 | gene:17594289 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | TrpG protein; Highly similar to anthranilate synthase beta subunit. | 0.950 |
lmo1626 | trpA | gene:17594283 | gene:17594284 | Lmo1626 protein. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.901 |
lmo1626 | trpB | gene:17594283 | gene:17594285 | Lmo1626 protein. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.847 |
lmo1626 | trpC | gene:17594283 | gene:17594287 | Lmo1626 protein. | Highly similar to indol-3-glycerol phosphate synthases; Belongs to the TrpC family. | 0.908 |
lmo1626 | trpD | gene:17594283 | gene:17594288 | Lmo1626 protein. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.595 |
lmo1626 | trpE | gene:17594283 | gene:17594290 | Lmo1626 protein. | Anthranilate synthase component 1; Part of a heterotetrameric complex that catalyzes the two- step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentr [...] | 0.574 |
lmo1626 | trpF | gene:17594283 | gene:17594286 | Lmo1626 protein. | Phosphoribosyl anthranilate isomerase; Belongs to the TrpF family. | 0.824 |
lmo1626 | trpG | gene:17594283 | gene:17594289 | Lmo1626 protein. | TrpG protein; Highly similar to anthranilate synthase beta subunit. | 0.574 |
lmo2749 | aroA | gene:17595466 | gene:17594257 | Lmo2749 protein; Similar to glutamine amidotransferase. | 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase. | 0.949 |
lmo2749 | lmo2750 | gene:17595466 | gene:17595467 | Lmo2749 protein; Similar to glutamine amidotransferase. | Lmo2750 protein; Similar to para-aminobenzoate synthase component I. | 0.999 |
lmo2749 | trpA | gene:17595466 | gene:17594284 | Lmo2749 protein; Similar to glutamine amidotransferase. | Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.968 |
lmo2749 | trpB | gene:17595466 | gene:17594285 | Lmo2749 protein; Similar to glutamine amidotransferase. | Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.953 |
page 1 of 6