STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2059Lmo2059 protein; Similar to potassium channel subunit. (247 aa)    
Predicted Functional Partners:
lmo0993
Lmo0993 protein; Similar to Na+-transporting ATP synthase subunit J.
  
 
 0.919
cinA
Similar to competence-damage inducible protein CinA; Belongs to the CinA family.
    
 0.734
lmo1822
Lmo1822 protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.726
lmo1044
Lmo1044 protein; Similar to molybdopterin converting factor, subunit 2.
   
    0.696
nifJ
NifJ protein; Highly similar to pyruvate-flavodoxin oxidoreductase.
  
 
 0.671
lmo0430
Lmo0430 protein; Similar to transcriptional regulator (LysR family); Belongs to the LysR transcriptional regulatory family.
   
    0.602
lmo1201
Lmo1201 protein; Similar uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase.
  
    0.581
lmo1555
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
    0.565
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.531
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 1 subfamily.
  
    0.527
Your Current Organism:
Listeria monocytogenes
NCBI taxonomy Id: 169963
Other names: L. monocytogenes EGD-e, Listeria monocytogenes ATCC BAA-679, Listeria monocytogenes EGD-e, Listeria monocytogenes EGDe, Listeria monocytogenes str. EGD-e, Listeria monocytogenes strain EGD-e
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