STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsKHypothetical protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. (310 aa)    
Predicted Functional Partners:
deoC-2
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 0.966
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
   
 0.944
prs
Ribose-phosphate diphosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
 0.934
AMK53493.1
'Pfam: Transketolase, thiamine diphosphate binding domain'.
  
 0.927
AMK54045.1
Pfam: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); TIGRFAM: rpiA: ribose 5-phosphate isomerase A.
    
 0.921
AMK54541.1
Hypothetical protein; 'Pfam: Phosphoglucomutase/phosphomannomutase, C-terminal domain; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; PRINTS: Phosphoglucomutase/phosphomannomutase family signature; Pfam: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III'.
  
 
 0.911
AMK54742.1
Hypothetical protein; 'Pfam: Transketolase, thiamine diphosphate binding domain'.
    
 0.909
AMK53492.1
'Pfam: Transketolase, pyrimidine binding domain; Pfam: Transketolase, C-terminal domain; SMART: Transketolase, pyrimidine binding domain'.
   
 
 0.908
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
   
 
 0.907
AMK54918.1
Hypothetical protein; Pfam: Metalloenzyme superfamily.
   
 
 0.907
Your Current Organism:
Faecalibaculum rodentium
NCBI taxonomy Id: 1702221
Other names: Allobaculum sp. Alo17, Erysipelotrichaceae bacterium Alo17, F. rodentium, Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017, JCM 30274, KCTC 15484, strain ALO17
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