STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP52646.1Putative nudix hydrolase YeaB. (258 aa)    
Predicted Functional Partners:
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
      0.934
AOP54666.1
NAD(P)HX dehydratase.
  
 0.669
AOP52644.1
Transcriptional regulator, Crp/Fnr family; cAMP-binding protein - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase.
       0.651
AOP52647.1
Hypothetical protein; FIG00447880.
       0.615
AOP53895.1
16S rRNA (cytosine(967)-C(5))-methyltransferase.
  
 
 0.529
AOP52527.1
Putative serine protease.
  
 
  0.488
AOP52706.1
Hypothetical protein; FIG00448407.
 
     0.456
AOP53612.1
Diadenosine tetraphosphate (Ap4A) hydrolase-like HIT family hydrolase; COG0537.
 
 
   0.424
AOP51930.1
Hypothetical protein; FIG137598.
  
    0.418
AOP52640.1
Hypothetical protein; FIG137598.
  
    0.418
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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