STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOP54834.1Transcriptional regulator, AraC family. (318 aa)    
Predicted Functional Partners:
AOP54835.1
Amidases related to nicotinamidase.
 
    0.933
AOP52280.1
Transcriptional regulator, AraC family.
 
   0.580
AOP52441.1
Transcriptional regulator, AraC family.
 
   0.476
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.451
AOP55526.1
Putative CONSERVED TRANSMEMBRANE PROTEIN.
  
    0.443
AOP52610.1
Transcriptional regulator, AraC family.
 
   0.436
AOP53722.1
Transcriptional regulator, AraC family.
 
  
0.427
AOP55218.1
Putative secreted protein.
 
    0.409
AOP52521.1
Homoprotocatechuate 2,3-dioxygenase.
  
    0.404
Your Current Organism:
Brevibacterium linens
NCBI taxonomy Id: 1703
Other names: ATCC 9172, B. linens, Bacterium linens, Brevibacterium sp. RS16(2010), CIP 101125, Corynebacterium sp. AC474, DSM 20425, HAMBI 2038, IFO 12142, NBRC 12142, NRRL B-4210, VKM Ac-2112
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