Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SJZ40430.1 | SJZ45565.1 | SAMN02745154_00009 | SAMN02745154_00167 | DNA polymerase-1. | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | 0.580 |
| SJZ40430.1 | SJZ47181.1 | SAMN02745154_00009 | SAMN02745154_00230 | DNA polymerase-1. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.721 |
| SJZ40430.1 | SJZ48148.1 | SAMN02745154_00009 | SAMN02745154_00270 | DNA polymerase-1. | Topoisomerase-4 subunit A. | 0.545 |
| SJZ40430.1 | SJZ49779.1 | SAMN02745154_00009 | SAMN02745154_00329 | DNA polymerase-1. | Chromosome segregation ATPase. | 0.570 |
| SJZ40430.1 | SJZ49810.1 | SAMN02745154_00009 | SAMN02745154_00330 | DNA polymerase-1. | Chromosome segregation ATPase. | 0.570 |
| SJZ40430.1 | SJZ50578.1 | SAMN02745154_00009 | SAMN02745154_00355 | DNA polymerase-1. | Hypothetical protein. | 0.522 |
| SJZ40430.1 | SJZ56632.1 | SAMN02745154_00009 | SAMN02745154_00508 | DNA polymerase-1. | DNA polymerase-3 subunit beta. | 0.999 |
| SJZ40430.1 | gyrA | SAMN02745154_00009 | SAMN02745154_00015 | DNA polymerase-1. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.601 |
| SJZ40430.1 | gyrB | SAMN02745154_00009 | SAMN02745154_00473 | DNA polymerase-1. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.610 |
| SJZ40430.1 | smc | SAMN02745154_00009 | SAMN02745154_00247 | DNA polymerase-1. | Chromosome segregation protein; Required for chromosome condensation and partitioning. Belongs to the SMC family. | 0.522 |
| SJZ45565.1 | SJZ40430.1 | SAMN02745154_00167 | SAMN02745154_00009 | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | DNA polymerase-1. | 0.580 |
| SJZ45565.1 | SJZ47181.1 | SAMN02745154_00167 | SAMN02745154_00230 | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.433 |
| SJZ45565.1 | gyrB | SAMN02745154_00167 | SAMN02745154_00473 | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.539 |
| SJZ47181.1 | SJZ40430.1 | SAMN02745154_00230 | SAMN02745154_00009 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | DNA polymerase-1. | 0.721 |
| SJZ47181.1 | SJZ45565.1 | SAMN02745154_00230 | SAMN02745154_00167 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | tRNA pseudouridine55 synthase; Belongs to the pseudouridine synthase TruB family. | 0.433 |
| SJZ47181.1 | SJZ48148.1 | SAMN02745154_00230 | SAMN02745154_00270 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | Topoisomerase-4 subunit A. | 0.488 |
| SJZ47181.1 | SJZ56632.1 | SAMN02745154_00230 | SAMN02745154_00508 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | DNA polymerase-3 subunit beta. | 0.498 |
| SJZ47181.1 | gyrA | SAMN02745154_00230 | SAMN02745154_00015 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | DNA gyrase subunit A; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.488 |
| SJZ47181.1 | gyrB | SAMN02745154_00230 | SAMN02745154_00473 | SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. | 0.517 |
| SJZ48148.1 | SJZ40430.1 | SAMN02745154_00270 | SAMN02745154_00009 | Topoisomerase-4 subunit A. | DNA polymerase-1. | 0.545 |
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