STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EQW78_15850Unannotated protein. (99 aa)    
Predicted Functional Partners:
rbpA
Unannotated protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.775
EQW78_07080
Unannotated protein.
  
     0.772
whiA
Unannotated protein; Involved in cell division and chromosome segregation.
  
     0.769
EQW78_01320
Unannotated protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
     0.765
EQW78_07740
Unannotated protein.
  
     0.761
EQW78_00110
Unannotated protein.
  
     0.754
EQW78_16160
Unannotated protein.
  
     0.754
EQW78_12815
Unannotated protein.
  
     0.745
EQW78_15835
Unannotated protein.
 
     0.738
EQW78_16050
Unannotated protein.
  
     0.730
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 13506, IFO 15015, JCM 3160, LMG 4072, LMG:4072, NBRC 15015, NCIB 10587, NCIB:10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, strain 891, strain rskov 27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.