STRINGSTRING
JOFV01000001_gene1803 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1803" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1803annotation not available (411 aa)    
Predicted Functional Partners:
JOFV01000024_gene2108
annotation not available (696 aa)
 
  0.998
JOFV01000016_gene66
annotation not available (603 aa)
 
  0.972
JOFV01000005_gene2439
annotation not available (606 aa)
 
  0.971
JOFV01000003_gene1644
annotation not available (355 aa)
 
 
  0.962
JOFV01000001_gene1802
annotation not available (396 aa)
 
 
  0.927
JOFV01000005_gene2413
annotation not available (299 aa)
  0.899
JOFV01000005_gene2416
annotation not available (284 aa)
 
 
    0.862
JOFV01000006_gene2610
annotation not available (495 aa)
 
 
  0.852
JOFV01000010_gene1149
annotation not available (734 aa)
         
  0.850
JOFV01000005_gene2370
annotation not available (387 aa)
 
 
  0.830
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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