STRINGSTRING
JOFV01000001_gene1848 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1848" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1848annotation not available (184 aa)    
Predicted Functional Partners:
JOFV01000001_gene1847
annotation not available (199 aa)
              0.867
JOFV01000007_gene2999
annotation not available (223 aa)
   
          0.720
JOFV01000001_gene1845
annotation not available (955 aa)
              0.713
JOFV01000008_gene3262
annotation not available (168 aa)
   
          0.681
JOFV01000007_gene2929
annotation not available (158 aa)
   
          0.674
JOFV01000001_gene1846
annotation not available (133 aa)
              0.599
JOFV01000016_gene41
annotation not available (174 aa)
   
          0.580
JOFV01000015_gene1747
annotation not available (217 aa)
   
          0.557
JOFV01000013_gene1026
annotation not available (67 aa)
   
          0.528
JOFV01000001_gene1844
annotation not available (220 aa)
              0.500
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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