STRINGSTRING
JOFV01000001_gene1868 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1868" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1868annotation not available (290 aa)    
Predicted Functional Partners:
JOFV01000002_gene438
annotation not available (909 aa)
 
   
  0.674
JOFV01000001_gene1867
annotation not available (675 aa)
              0.586
JOFV01000016_gene16
annotation not available (760 aa)
 
   
  0.559
JOFV01000013_gene972
annotation not available (1255 aa)
         
  0.525
JOFV01000003_gene1460
annotation not available (1305 aa)
         
  0.525
JOFV01000001_gene1869
annotation not available (213 aa)
 
          0.514
JOFV01000013_gene973
annotation not available (508 aa)
         
  0.510
JOFV01000003_gene1461
annotation not available (569 aa)
         
  0.510
JOFV01000003_gene1427
annotation not available (188 aa)
         
  0.428
JOFV01000003_gene1527
annotation not available (312 aa)
   
   
  0.402
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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