STRINGSTRING
JOFV01000001_gene1900 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1900" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1900annotation not available (992 aa)    
Predicted Functional Partners:
JOFV01000001_gene1901
annotation not available (663 aa)
 
   
  0.826
JOFV01000001_gene1902
annotation not available (889 aa)
 
   
  0.768
JOFV01000023_gene1351
annotation not available (705 aa)
 
        0.756
JOFV01000014_gene843
annotation not available (390 aa)
 
  0.752
JOFV01000026_gene410
annotation not available (559 aa)
   
   
  0.734
JOFV01000001_gene1865
annotation not available (494 aa)
   
          0.724
JOFV01000009_gene399
annotation not available (849 aa)
   
   
  0.695
JOFV01000006_gene2654
annotation not available (1334 aa)
 
     
  0.691
JOFV01000008_gene3239
annotation not available (672 aa)
   
          0.668
JOFV01000006_gene2847
annotation not available (887 aa)
   
          0.667
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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