STRINGSTRING
JOFV01000001_gene1927 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1927" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1927annotation not available (278 aa)    
Predicted Functional Partners:
JOFV01000001_gene1928
annotation not available (310 aa)
 
   
  0.978
JOFV01000016_gene51
annotation not available (153 aa)
   
          0.692
JOFV01000005_gene2445
annotation not available (318 aa)
 
     
  0.643
JOFV01000014_gene866
annotation not available (345 aa)
   
          0.643
JOFV01000001_gene1929
annotation not available (237 aa)
              0.640
JOFV01000018_gene247
annotation not available (497 aa)
   
          0.638
JOFV01000015_gene1769
annotation not available (320 aa)
       
  0.619
JOFV01000010_gene1232
annotation not available (603 aa)
   
          0.609
JOFV01000016_gene50
annotation not available (172 aa)
   
          0.605
JOFV01000003_gene1465
annotation not available (332 aa)
   
          0.592
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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