STRINGSTRING
JOFV01000001_gene1933 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1933" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1933annotation not available (167 aa)    
Predicted Functional Partners:
JOFV01000002_gene491
annotation not available (543 aa)
     
 
  0.925
JOFV01000009_gene287
annotation not available (777 aa)
       
  0.877
JOFV01000002_gene489
annotation not available (493 aa)
     
  0.806
JOFV01000002_gene492
annotation not available (271 aa)
     
    0.790
JOFV01000002_gene495
annotation not available (223 aa)
     
 
  0.789
JOFV01000002_gene494
annotation not available (75 aa)
     
  0.781
JOFV01000008_gene3140
annotation not available (289 aa)
       
  0.776
JOFV01000002_gene490
annotation not available (298 aa)
     
 
    0.770
JOFV01000009_gene325
annotation not available (767 aa)
   
 
  0.769
JOFV01000002_gene488
annotation not available (94 aa)
     
 
    0.726
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
Server load: low (7%) [HD]