STRINGSTRING
JOFV01000001_gene1968 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1968" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1968annotation not available (644 aa)    
Predicted Functional Partners:
JOFV01000001_gene1971
annotation not available (440 aa)
 
          0.841
JOFV01000001_gene1969
annotation not available (280 aa)
 
          0.718
JOFV01000001_gene1970
annotation not available (318 aa)
 
          0.697
JOFV01000002_gene477
annotation not available (759 aa)
 
        0.684
JOFV01000014_gene900
annotation not available (551 aa)
 
          0.630
JOFV01000011_gene2518
annotation not available (1499 aa)
 
          0.626
JOFV01000003_gene1655
annotation not available (674 aa)
 
          0.538
JOFV01000002_gene434
annotation not available (221 aa)
 
          0.498
JOFV01000006_gene2825
annotation not available (816 aa)
 
     
  0.473
JOFV01000011_gene2512
annotation not available (505 aa)
 
          0.456
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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