STRINGSTRING
JOFV01000001_gene1980 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1980" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1980annotation not available (354 aa)    
Predicted Functional Partners:
JOFV01000008_gene3255
annotation not available (282 aa)
  0.936
JOFV01000006_gene2564
annotation not available (325 aa)
    0.936
JOFV01000002_gene615
annotation not available (309 aa)
  0.925
JOFV01000006_gene2723
annotation not available (312 aa)
    0.907
JOFV01000008_gene3125
annotation not available (309 aa)
  0.905
JOFV01000002_gene614
annotation not available (375 aa)
  0.902
JOFV01000012_gene791
annotation not available (317 aa)
  0.898
JOFV01000022_gene1710
annotation not available (298 aa)
    0.884
JOFV01000006_gene2724
annotation not available (329 aa)
 
    0.876
JOFV01000008_gene3253
annotation not available (409 aa)
   
  0.869
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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