STRINGSTRING
JOFV01000001_gene1983 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1983" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1983annotation not available (748 aa)    
Predicted Functional Partners:
JOFV01000017_gene111
annotation not available (481 aa)
  0.876
JOFV01000011_gene2459
annotation not available (280 aa)
  0.863
JOFV01000001_gene1984
annotation not available (211 aa)
              0.748
JOFV01000001_gene1981
annotation not available (297 aa)
     
      0.709
JOFV01000001_gene1982
annotation not available (486 aa)
              0.691
JOFV01000002_gene592
annotation not available (948 aa)
   
 
    0.667
JOFV01000005_gene2379
annotation not available (379 aa)
 
  0.615
JOFV01000001_gene1985
annotation not available (280 aa)
              0.601
JOFV01000024_gene2108
annotation not available (696 aa)
     
    0.585
JOFV01000017_gene109
annotation not available (234 aa)
 
 
      0.556
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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