STRINGSTRING
JOFV01000001_gene1992 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene1992" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene1992annotation not available (470 aa)    
Predicted Functional Partners:
JOFV01000005_gene2156
annotation not available (2053 aa)
   
 
  0.793
JOFV01000003_gene1604
annotation not available (1422 aa)
   
 
  0.628
JOFV01000001_gene1982
annotation not available (486 aa)
       
  0.621
JOFV01000002_gene456
annotation not available (861 aa)
     
 
  0.564
JOFV01000013_gene929
annotation not available (298 aa)
   
          0.563
JOFV01000013_gene928
annotation not available (352 aa)
   
          0.554
JOFV01000007_gene2898
annotation not available (369 aa)
   
          0.553
JOFV01000006_gene2742
annotation not available (259 aa)
   
        0.524
JOFV01000005_gene2405
annotation not available (715 aa)
       
    0.512
JOFV01000001_gene2075
annotation not available (356 aa)
   
 
  0.505
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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