STRINGSTRING
JOFV01000001_gene2009 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene2009" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene2009annotation not available (346 aa)    
Predicted Functional Partners:
JOFV01000001_gene1999
annotation not available (277 aa)
  0.972
JOFV01000001_gene2001
annotation not available (342 aa)
 
  0.943
JOFV01000006_gene2774
annotation not available (286 aa)
  0.928
JOFV01000006_gene2731
annotation not available (319 aa)
  0.927
JOFV01000013_gene993
annotation not available (288 aa)
  0.922
JOFV01000004_gene3488
annotation not available (298 aa)
  0.901
JOFV01000003_gene1479
annotation not available (304 aa)
  0.872
JOFV01000001_gene2007
annotation not available (307 aa)
   
 
    0.851
JOFV01000001_gene2005
annotation not available (81 aa)
   
        0.847
JOFV01000001_gene2004
annotation not available (1440 aa)
   
        0.847
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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