STRINGSTRING
JOFV01000001_gene2013 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene2013" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene2013annotation not available (96 aa)    
Predicted Functional Partners:
JOFV01000003_gene1557
annotation not available (555 aa)
   
          0.752
JOFV01000003_gene1543
annotation not available (501 aa)
   
          0.723
JOFV01000009_gene306
annotation not available (67 aa)
   
          0.639
JOFV01000001_gene2012
annotation not available (502 aa)
              0.636
JOFV01000001_gene2078
annotation not available (1356 aa)
 
          0.627
JOFV01000001_gene2014
annotation not available (245 aa)
              0.623
JOFV01000001_gene2011
annotation not available (324 aa)
              0.571
JOFV01000002_gene533
annotation not available (229 aa)
   
          0.536
JOFV01000002_gene463
annotation not available (339 aa)
   
          0.520
JOFV01000001_gene2015
annotation not available (498 aa)
 
          0.504
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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