STRINGSTRING
JOFV01000001_gene2066 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000001_gene2066" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000001_gene2066annotation not available (270 aa)    
Predicted Functional Partners:
JOFV01000001_gene2067
annotation not available (201 aa)
  0.999
JOFV01000016_gene33
annotation not available (169 aa)
   
  0.998
JOFV01000009_gene353
annotation not available (261 aa)
   
  0.994
JOFV01000017_gene88
annotation not available (966 aa)
       
  0.992
JOFV01000016_gene39
annotation not available (222 aa)
   
 
  0.990
JOFV01000008_gene3137
annotation not available (227 aa)
   
 
  0.982
JOFV01000005_gene2342
annotation not available (208 aa)
   
 
  0.979
JOFV01000001_gene2054
annotation not available (238 aa)
       
    0.966
JOFV01000002_gene473
annotation not available (710 aa)
   
   
  0.905
JOFV01000005_gene2170
annotation not available (427 aa)
   
 
  0.897
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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