STRINGSTRING
JOFV01000002_gene420 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000002_gene420" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000002_gene420annotation not available (287 aa)    
Predicted Functional Partners:
JOFV01000002_gene421
annotation not available (399 aa)
 
          0.876
JOFV01000002_gene419
annotation not available (1993 aa)
 
   
    0.806
JOFV01000002_gene428
annotation not available (1832 aa)
 
   
    0.742
JOFV01000002_gene422
annotation not available (369 aa)
 
          0.707
JOFV01000002_gene425
annotation not available (420 aa)
 
 
    0.648
JOFV01000002_gene423
annotation not available (373 aa)
 
          0.606
JOFV01000005_gene2156
annotation not available (2053 aa)
   
 
  0.583
JOFV01000003_gene1604
annotation not available (1422 aa)
   
 
  0.572
JOFV01000001_gene1909
annotation not available (347 aa)
 
        0.522
JOFV01000001_gene1911
annotation not available (253 aa)
   
          0.499
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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