STRINGSTRING
JOFV01000002_gene429 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000002_gene429" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000002_gene429annotation not available (391 aa)    
Predicted Functional Partners:
JOFV01000002_gene426
annotation not available (334 aa)
 
    0.885
JOFV01000002_gene430
annotation not available (336 aa)
 
          0.865
JOFV01000017_gene79
annotation not available (319 aa)
 
 
    0.719
JOFV01000002_gene434
annotation not available (221 aa)
 
          0.651
JOFV01000002_gene428
annotation not available (1832 aa)
 
   
    0.645
JOFV01000002_gene620
annotation not available (1194 aa)
     
    0.636
JOFV01000002_gene595
annotation not available (338 aa)
 
 
  0.627
JOFV01000002_gene431
annotation not available (306 aa)
 
          0.584
JOFV01000013_gene1058
annotation not available (1500 aa)
           
  0.571
JOFV01000005_gene2177
annotation not available (827 aa)
   
 
  0.525
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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