STRINGSTRING
JOFV01000002_gene560 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000002_gene560" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000002_gene560annotation not available (294 aa)    
Predicted Functional Partners:
JOFV01000002_gene559
annotation not available (291 aa)
 
  0.999
JOFV01000002_gene558
annotation not available (469 aa)
  0.995
JOFV01000005_gene2352
annotation not available (226 aa)
 
   
  0.745
JOFV01000005_gene2354
annotation not available (348 aa)
 
   
  0.699
JOFV01000005_gene2353
annotation not available (253 aa)
 
   
  0.699
JOFV01000005_gene2351
annotation not available (291 aa)
   
   
  0.688
JOFV01000001_gene1959
annotation not available (635 aa)
       
  0.683
JOFV01000002_gene666
annotation not available (468 aa)
       
    0.587
JOFV01000016_gene19
annotation not available (483 aa)
       
  0.586
JOFV01000010_gene1160
annotation not available (507 aa)
       
  0.586
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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