STRINGSTRING
JOFV01000002_gene643 protein (Oerskovia turbata) - STRING interaction network
"JOFV01000002_gene643" - annotation not available in Oerskovia turbata
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
JOFV01000002_gene643annotation not available (284 aa)    
Predicted Functional Partners:
JOFV01000013_gene1058
annotation not available (1500 aa)
       
  0.867
JOFV01000002_gene645
annotation not available (289 aa)
              0.859
JOFV01000002_gene644
annotation not available (127 aa)
              0.845
JOFV01000002_gene620
annotation not available (1194 aa)
     
 
  0.716
JOFV01000004_gene3338
annotation not available (135 aa)
 
            0.703
JOFV01000002_gene592
annotation not available (948 aa)
       
    0.671
JOFV01000002_gene646
annotation not available (163 aa)
 
          0.613
JOFV01000008_gene3130
annotation not available (463 aa)
   
 
  0.589
JOFV01000016_gene46
annotation not available (1198 aa)
   
 
    0.572
JOFV01000007_gene2935
annotation not available (395 aa)
       
  0.563
Your Current Organism:
Oerskovia turbata
NCBI taxonomy Id: 1713
Other names: ATCC 25835, CFBP 4266, CIP 100331, Cellulomonas turbata, Cellulosimonas turbata, DSM 20577, IFO 15015, JCM 3160, LMG 4072, NBRC 15015, NCIB 10587, NCIMB 10587, NCTC 11973, NRRL B-8019, Nocardia turbata, O. turbata, Oerskovia turbata, strain 891, strain rskov 27
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