STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPL46631.1Signal recognition particle; Binds to 7S RNA to mediate binding of the signal recognition particle protein Srp54; Derived by automated computational analysis using gene prediction method: Protein Homology. (101 aa)    
Predicted Functional Partners:
KPL44933.1
Signal recognition particle; With 7S RNA and Srp19 binds to the signal sequence of presecretory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.999
KPL45581.1
50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.880
FtsY
Signal recognition particle-docking protein FtsY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.876
KPL46171.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.863
KPL45778.1
50S ribosomal protein L37; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.863
KPL45501.1
30S ribosomal protein S4e; The function of this ribosomal subunit is unknown; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.861
KPL45499.1
30S ribosomal protein S14; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.851
KPL47016.1
30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.841
rpl24p
50S ribosomal protein L24; Assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.837
KPL45511.1
50S ribosomal protein L23; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.834
Your Current Organism:
Methanosarcina flavescens
NCBI taxonomy Id: 1715806
Other names: DSM 100822, JCM 30921, M. flavescens, Methanosarcina flavescens Kern et al. 2016, Methanosarcina sp. E03.2, strain E03.2
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