STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glyQSGlycine--tRNA ligase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. (455 aa)    
Predicted Functional Partners:
AO396_07715
Valine--tRNA ligase.
  
  
 0.888
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.804
AO394_01850
Uncharacterized protein.
       0.788
AO394_01855
Uncharacterized protein.
       0.778
AO395_09320
annotation not available
       0.773
AO396_09625
Uncharacterized protein.
   
 
 0.754
AO396_00185
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
    0.662
AO394_01875
dCMP deaminase.
       0.655
alaS
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
 
 0.654
leuS
Leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.646
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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