STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB09816.1Predicted arabinose efflux permease, MFS family. (430 aa)    
Predicted Functional Partners:
SKB09818.1
DNA-binding transcriptional regulator, MarR family.
 
   
 0.915
SKB09820.1
Exodeoxyribonuclease-3.
       0.668
SKB09822.1
Geranylgeranyl reductase family.
       0.536
Your Current Organism:
Aeromicrobium choanae
NCBI taxonomy Id: 1736691
Other names: A. choanae, Aeromicrobium choanae Ber et al. 2017, Aeromicrobium sp. 9H-4, CCM 8650, LMG 29165, LMG:29165, ZIM B1021, strain 9H-4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.