STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BA190_00045IclR family transcriptional regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (417 aa)    
Predicted Functional Partners:
OCC03394.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.995
OCC06668.1
HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.965
OCC07048.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.907
OCC06671.1
5-carboxymethyl-2-hydroxymuconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.845
OCC06670.1
Homoserine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.817
OCC06669.1
Aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.780
OCC03395.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.766
OCC06673.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
OCC06672.1
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.707
OCC06674.1
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.585
Your Current Organism:
Labrys sp. WJW
NCBI taxonomy Id: 1737983
Other names: L. sp. WJW
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.