OCC06396.1 protein (Labrys sp. WJW) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OCC06396.1

NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)

Predicted Functional Partners:

OCC06397.1

0.818

OCC03272.1

0.793

OCC00760.1

0.756

OCC02229.1

0.741

putA

0.709

OCC01895.1

0.708

OCC05561.1

0.626

OCC04972.1

0.624

OCC07042.1

0.622

OCC00585.1

0.613

Your Current Organism:

Labrys sp. WJW

NCBI taxonomy Id: 1737983
Other names: L. sp. WJW

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OCC00585.1	OCC06396.1	BA190_33285	BA190_03990	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.613
OCC00585.1	putA	BA190_33285	BA190_21180	Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
OCC00760.1	OCC03272.1	BA190_32195	BA190_19465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
OCC00760.1	OCC05561.1	BA190_32195	BA190_08950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
OCC00760.1	OCC06396.1	BA190_32195	BA190_03990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
OCC00760.1	OCC06397.1	BA190_32195	BA190_03995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
OCC00760.1	OCC07042.1	BA190_32195	BA190_02150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.524
OCC00760.1	putA	BA190_32195	BA190_21180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.771
OCC01895.1	OCC03272.1	BA190_26245	BA190_19465	Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
OCC01895.1	OCC05561.1	BA190_26245	BA190_08950	Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.	enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
OCC01895.1	OCC06396.1	BA190_26245	BA190_03990	Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
OCC02229.1	OCC06396.1	BA190_24540	BA190_03990	methionyl-tRNA formyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
OCC03272.1	OCC00760.1	BA190_19465	BA190_32195	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.858
OCC03272.1	OCC01895.1	BA190_19465	BA190_26245	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fumarate hydratase; Catalyzes the formation of malate from fumerate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
OCC03272.1	OCC04972.1	BA190_19465	BA190_11320	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
OCC03272.1	OCC06396.1	BA190_19465	BA190_03990	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.793
OCC03272.1	OCC06397.1	BA190_19465	BA190_03995	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
OCC03272.1	putA	BA190_19465	BA190_21180	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichai coli this protein also self-regulates transcription via a DNA-binding domain at the N-terminus; forms dimers and is a peripherally membrane-associated protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
OCC04972.1	OCC03272.1	BA190_11320	BA190_19465	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
OCC04972.1	OCC06396.1	BA190_11320	BA190_03990	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent succinate-semialdehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.624