STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH67684.1Uncharacterized iron-regulated membrane protein. (508 aa)    
Predicted Functional Partners:
SEH67668.1
Hypothetical protein.
  
  
 0.819
SEH67656.1
Hypothetical protein.
       0.773
SEH67644.1
Outer membrane receptor proteins, mostly Fe transport.
 
     0.707
SEH63558.1
Uncharacterized iron-regulated membrane protein.
  
     0.704
SEI03692.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
  
 0.670
SEH67336.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
  
 0.631
SEH92797.1
MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG.
  
    0.601
SEI00917.1
TonB-dependent receptor.
  
     0.569
SEH67188.1
Iron complex outermembrane recepter protein.
 
     0.547
SEH55327.1
FecR family protein.
 
   
 0.476
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.