STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEH91425.1Diguanylate cyclase (GGDEF) domain-containing protein. (300 aa)    
Predicted Functional Partners:
SEI07980.1
Putative two-component system response regulator.
 
 
  0.941
SEH92563.1
Signal transduction histidine kinase.
 0.928
SEH91838.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 0.900
SEI07988.1
PAS domain S-box-containing protein.
 
 0.897
SEI06414.1
Signal transduction histidine kinase.
 0.896
SEI09449.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
 0.892
SEI03685.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 0.887
SEH93267.1
Response regulator receiver domain-containing protein.
 
 
 0.871
SEH66628.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.865
SEH84444.1
EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant).
  0.860
Your Current Organism:
Rheinheimera pacifica
NCBI taxonomy Id: 173990
Other names: CCUG 46544, DSM 17616, IAM 15043, JCM 12090, NBRC 103167, NRIC 0539, R. pacifica, Rheinheimera pacifica Romanenko et al. 2003
Server load: low (22%) [HD]