STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900086725_00616Unannotated protein. (624 aa)    
Predicted Functional Partners:
GCA_900086725_00615
Unannotated protein.
    0.811
GCA_900086725_00620
Unannotated protein.
 
     0.807
GCA_900086725_00621
Unannotated protein.
 
     0.801
GCA_900086725_00622
Unannotated protein.
 
     0.773
GCA_900086725_00614
Unannotated protein.
       0.697
GCA_900086725_00619
Unannotated protein.
 
     0.639
GCA_900086725_03773
Unannotated protein.
 
     0.582
GCA_900086725_00617
Unannotated protein.
       0.556
GCA_900086725_03774
Unannotated protein.
 
     0.552
GCA_900086725_00613
Unannotated protein.
       0.506
Your Current Organism:
Bariatricus massiliensis
NCBI taxonomy Id: 1745713
Other names: B. massiliensis, CSUR P2179, DSM 101783, Ruminococcus sp. AT12, strain AT12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.