STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SAMN02949497_3855RNA polymerase sigma factor, sigma-70 family. (212 aa)    
Predicted Functional Partners:
SAMN02949497_3250
Protein-glutamate methylesterase.
  
 0.981
SAMN02949497_2548
PAS domain-containing protein.
   
 0.974
SAMN02949497_3251
Signal transduction histidine kinase.
 
 0.964
SAMN02949497_1313
Histidine kinase.
   
 0.954
SAMN02949497_2243
Uncharacterized protein.
  
 0.954
SAMN02949497_0358
PAS domain S-box-containing protein.
   
 0.951
SAMN02949497_1479
PAS fold-containing protein.
   
 0.951
SAMN02949497_0244
Histidine kinase.
   
 0.947
SAMN02949497_0490
PAS domain S-box-containing protein.
  
 0.939
SAMN02949497_2549
Signal transduction histidine kinase.
   
0.939
Your Current Organism:
Methylomagnum ishizawai
NCBI taxonomy Id: 1760988
Other names: DSM 29768, JCM 18894, KCTC 4681, M. ishizawai, Methylocaldum sp. 175, Methylomagnum ishizawai Khalifa et al. 2015 emend. Frindte et al. 2017, NBRC 109438, strain RS11D-Pr
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.