STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0126Conserved hypothetical protein; Identified by similarity to OMNI:SA0530; match to protein family HMM PF01541; Belongs to the UPF0213 family. (82 aa)    
Predicted Functional Partners:
SERP0125
Conserved hypothetical protein; Identified by similarity to OMNI:SA0529.
  
  
 0.938
rsmI
Methyltransferase, tetrapyrrole family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
    0.931
SERP0124
Conserved hypothetical protein; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
    0.835
SERP0123
Conserved hypothetical protein; Identified by similarity to OMNI:SA0527; match to protein family HMM PF04468.
  
    0.818
metS
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.787
SERP0119
Orn/Lys/Arg decarboxylase; Identified by match to protein family HMM PF01276.
  
    0.730
SERP0121
Conserved hypothetical protein; Identified by similarity to OMNI:SA0525.
       0.730
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.720
SERP0122
DNA polymerase III, delta prime subunit, putative; Identified by similarity to EGAD:13071.
  
    0.556
SERP0129
Deoxyribonuclease, TatD family; Identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010.
  
    0.480
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.