STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SERP0480Identified by match to protein family HMM PF02566; Belongs to the OsmC/Ohr family. (140 aa)    
Predicted Functional Partners:
aroD
3-dehydroquinate dehydratase, type I; Involved in the third step of the chorismate pathway, which leads to the biosynthesis of aromatic amino acids. Catalyzes the cis- dehydration of 3-dehydroquinate (DHQ) and introduces the first double bond of the aromatic ring to yield 3-dehydroshikimate. Belongs to the type-I 3-dehydroquinase family.
       0.817
SERP0482
Identified by match to protein family HMM PF00881.
       0.766
norR
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
  
 0.537
sarZ
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
 
  
 0.535
SERP2196
Transcriptional regulator, MarR family; Identified by match to protein family HMM PF01047.
  
  
 0.461
SERP1385
Sensor histidine kinase; Identified by match to protein family HMM PF02518.
   
    0.449
SERP1748
Dps family protein; Identified by match to protein family HMM PF00210; match to protein family HMM PF02047; Belongs to the Dps family.
  
  
 0.448
rexB
Exonuclease RexB; The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination. The AddB nuclease domain is not required for chi fragment generation; this subunit has 5' -> 3' nuclease activity.
   
    0.440
adh
Alcohol dehydrogenase, zinc-containing; Identified by similarity to EGAD:15881; match to protein family HMM PF00107.
  
  
 0.432
SERP1973
General stress protein 26, putative; Identified by similarity to EGAD:107318.
 
    0.424
Your Current Organism:
Staphylococcus epidermidis
NCBI taxonomy Id: 176279
Other names: S. epidermidis RP62A, Staphylococcus epidermidis ATCC 35984, Staphylococcus epidermidis RP62A, Staphylococcus epidermidis str. RP62A, Staphylococcus epidermidis strain RP62A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.