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lcdH protein (Staphylococcus epidermidis ATCC12228) - STRING interaction network
"lcdH" - L-carnitine dehydrogenase in Staphylococcus epidermidis ATCC12228
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lcdHL-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3-dehydrocarnitine (321 aa)    
Predicted Functional Partners:
SE_0221
annotation not available (162 aa)
        0.980
SE_0219
annotation not available (300 aa)
 
   
  0.976
menB
1,4-dihydroxy-2-naphthoyl-CoA synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) (272 aa)
            0.891
SE_1927
annotation not available (158 aa)
 
        0.787
vraB
annotation not available (382 aa)
 
 
  0.763
SE_2384
annotation not available (394 aa)
 
 
  0.761
SE_1858
annotation not available (381 aa)
 
   
  0.737
SE_0218
annotation not available (179 aa)
 
     
  0.663
SE_0195
annotation not available (1005 aa)
   
   
  0.617
SE_2312
annotation not available (1498 aa)
         
  0.609
Your Current Organism:
Staphylococcus epidermidis ATCC12228
NCBI taxonomy Id: 176280
Other names: S. epidermidis ATCC 12228, Staphylococcus epidermidis ATCC 12228, Staphylococcus epidermidis ATCC12228
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